To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rTRMui")

In most cases, you don't need to download the package archive at all.

rTRMui

 

A shiny user interface for rTRM

Bioconductor version: Release (3.1)

This package provides a web interface to compute transcriptional regulatory modules with rTRM.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRMui")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rTRMui")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRMui")

 

PDF R Script Introduction to rTRMui
PDF   Reference Manual
Text   NEWS

Details

biocViews GUI, GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (2 years)
License GPL-3
Depends
Imports shiny (>= 0.9), rTRM, MotifDb, org.Hs.eg.db, org.Mm.eg.db
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rTRMui_1.6.0.tar.gz
Windows Binary rTRMui_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) rTRMui_1.6.0.tgz
Mac OS X 10.9 (Mavericks) rTRMui_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/rTRMui/tree/release-3.1
Package Short Url http://bioconductor.org/packages/rTRMui/
Package Downloads Report Download Stats

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