scDblFinder

DOI: 10.18129/B9.bioc.scDblFinder    

scDblFinder

Bioconductor version: Release (3.10)

Efficient identification of doublets in single-cell RNAseq directly from counts using overclustering-based generation of artifical doublets.

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("scDblFinder")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scDblFinder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scDblFinder")

 

HTML R Script scDblFinder
PDF   Reference Manual

Details

biocViews Preprocessing, RNASeq, SingleCell, Software
Version 1.0.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL-3
Depends R (>= 3.6)
Imports igraph, Matrix, matrixStats, BiocParallel, SummarizedExperiment, SingleCellExperiment, scran, scater, data.table, dplyr, ggplot2, randomForest, graphics, methods, stats
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/plger/scDblFinder
BugReports https://github.com/plger/scDblFinder/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scDblFinder_1.0.0.tar.gz
Windows Binary scDblFinder_1.0.0.zip
Mac OS X 10.11 (El Capitan) scDblFinder_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scDblFinder
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scDblFinder
Package Short Url https://bioconductor.org/packages/scDblFinder/
Package Downloads Report Download Stats

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