To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

   

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see clusterProfiler.

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 2.10

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterProfiler")

 

PDF An introduction to clusterProfiler
PDF clusterProfiler_for_unsupported_organism.pdf
PDF omics2012.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews Bioinformatics, Clustering, GO, MultipleComparisons, Pathways, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License Artistic-2.0
Depends R (>= 2.10)
Imports methods, stats4, ggplot2, DBI, plyr, AnnotationDbi, GO.db, KEGG.db, org.Hs.eg.db, DOSE
LinkingTo
Suggests GOSemSim, ReactomePA
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me DOSE, GOSemSim, ReactomePA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clusterProfiler_1.4.0.tar.gz
Windows Binary clusterProfiler_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/clusterProfiler/tree/release-2.10
Package Short Url http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report Download Stats

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