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Ramos, M, et al. (2017) Software for the Integration of Multiomics Experiments in Bioconductor Cancer Research 77:e39-e42. doi:10.1158/0008-5472.CAN-17-0344
Pasolli, E, et al. (2017) Accessible, curated metagenomic data through ExperimentHub Nature Methods 14, 1023–1024. doi:10.1038/nmeth.4468
Huber W, et al. (2015) Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods 12:115-121; doi:10.1038/nmeth.3252 (full-text free with registration).
Lawrence M, Huber W, Pagès H, Aboyoun P, Carlson M, et al. (2013) Software for Computing and Annotating Genomic Ranges. PLoS Comput Biol 9(8): e1003118. doi: 10.1371/journal.pcbi.1003118
Irizarry R, et al. (2015) Biomedical Data Science. Course Notes, EdX PH525.1x.

Recent

20 most recent PubMed and PubMed Central citations mentioning "Bioconductor". For a complete list, go to PubMed and PubMed Central. Last updated 2018-07-18T20:00:09-04:00.

Kimes PK, Reyes A. Reproducible and replicable comparisons using SummarizedBenchmark. Bioinformatics. doi:10.1093/bioinformatics/bty627 (17 July 2018)
Weichenberger CX, Rainer J, Pattaro C, Pramstaller PP, Domingues FS. Comparative assessment of different familial aggregation methods in the context of large and unstructured pedigrees. Bioinformatics. doi:10.1093/bioinformatics/bty541 (13 July 2018)
Moulos P, Alexandratos A, Nellas I, Dedos SG. Refining a steroidogenic model: an analysis of RNA-seq datasets from insect prothoracic glands BMC Genomics, 19, pp. 537. doi:10.1186/s12864-018-4896-2 (13 July 2018)
Kosch R, Delarocque J, Claus P, Becker SC, Jung K. Gene expression profiles in neurological tissues during West Nile virus infection: a critical meta-analysis BMC Genomics, 19, pp. 530. doi:10.1186/s12864-018-4914-4 (13 July 2018)
Fang XN, Yin M, Li H, Liang C, Xu C, Yang GW, Zhang HX. Comprehensive analysis of competitive endogenous RNAs network associated with head and neck squamous cell carcinoma Sci Rep, 8, pp. 10544. doi:10.1038/s41598-018-28957-y (12 July 2018)
Duan SF, Han PJ, Wang QM, Liu WQ, Shi JY, Li K, Zhang XL, Bai FY. The origin and adaptive evolution of domesticated populations of yeast from Far East Asia Nat Commun, 9, pp. 2690. doi:10.1038/s41467-018-05106-7 (12 July 2018)
Catoni M, Tsang JM, Greco AP, Zabet NR. DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts. Nucleic Acids Res. doi:10.1093/nar/gky602 (9 July 2018)
Poyntner C, Mirastschijski U, Sterflinger K, Tafer H. Transcriptome Study of an Exophiala dermatitidis PKS1 Mutant on an ex Vivo Skin Model: Is Melanin Important for Infection? Front Microbiol, 9, pp. 1457. doi:10.3389/fmicb.2018.01457 (3 July 2018)
Shrestha RK, Ding P, Jones JDG, MacLean D. A workflow for simplified analysis of ATAC-cap-seq data in R. Gigascience, 7(7). doi:10.1093/gigascience/giy080 (1 July 2018)
Stricker G, Galinier M, Gagneur J. GenoGAM 2.0: scalable and efficient implementation of genome-wide generalized additive models for gigabase-scale genomes. BMC Bioinformatics, 19(1), pp. 247. doi:10.1186/s12859-018-2238-7 (27 June 2018)
Ferreira HJ, Davalos V, de Moura MC, Soler M, Perez-Salvia M, Bueno-Costa A, Setien F, Moran S, Villanueva A, Esteller M. Circular RNA CpG island hypermethylation-associated silencing in human cancer Oncotarget, 9(49), pp. 29208-29219. doi:10.18632/oncotarget.25673 (26 June 2018)
Orzechowski P, Panszczyk A, Huang X, Moore JH. runibic: a Bioconductor package for parallel row-based biclustering of gene expression data. Bioinformatics. doi:10.1093/bioinformatics/bty512 (23 June 2018)
Jacob L, Combes F, Burger T. PEPA test: fast and powerful differential analysis from relative quantitative proteomics data using shared peptides. Biostatistics. doi:10.1093/biostatistics/kxy021 (18 June 2018)
Rue-Albrecht K, Marini F, Soneson C, Lun ATL. iSEE: Interactive SummarizedExperiment Explorer. F1000Res, 7, pp. 741. doi:10.12688/f1000research.14966.1 (14 June 2018)
Chen K, Wei Z, Liu H, de Magalhães JP, Rong R, Lu Z, Meng J. Enhancing Epitranscriptome Module Detection from m6A-Seq Data Using Threshold-Based Measurement Weighting Strategy Biomed Res Int, 2018, pp. 2075173. doi:10.1155/2018/2075173 (14 June 2018)
Seldeen KL, Pang M, Leiker MM, Bard JE, Rodríguez-Gonzalez M, Hernandez M, Sheridan Z, Nowak N, Troen BR. Chronic vitamin D insufficiency impairs physical performance in C57BL/6J mice Aging (Albany NY), 10(6), pp. 1338-1355. doi:10.18632/aging.101471 (14 June 2018)
Esteves GH, Reis LFL. A statistical method for measuring activation of gene regulatory networks. Stat Appl Genet Mol Biol, 17(3). doi:10.1515/sagmb-2016-0059 (13 June 2018)
Wei Z, Panneerdoss S, Timilsina S, Zhu J, Mohammad TA, Lu ZL, de Magalhães JP, Chen Y, Rong R, Huang Y, Rao MK, Meng J. Topological Characterization of Human and Mouse m5C Epitranscriptome Revealed by Bisulfite Sequencing Int J Genomics, 2018, pp. 1351964. doi:10.1155/2018/1351964 (13 June 2018)
Ge Y, Zhang C, Xiao S, Liang L, Liao S, Xiang Y, Cao K, Chen H, Zhou Y. Identification of differentially expressed genes in cervical cancer by bioinformatics analysis Oncol Lett, 16(2), pp. 2549-2558. doi:10.3892/ol.2018.8953 (12 June 2018)

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