To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefilter")

In most cases, you don't need to download the package archive at all.

genefilter

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see genefilter.

genefilter: methods for filtering genes from microarray experiments

Bioconductor version: 2.10

Some basic functions for filtering genes

Author: R. Gentleman, V. Carey, W. Huber, F. Hahne

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("genefilter")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefilter")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genefilter")

PDF		Diagnostic plots for independent filtering
PDF		How to find genes whose expression profile is similar to that of specified genes
PDF		Using the genefilter function to filter genes from a microarray dataset
PDF		Reference Manual

biocViews	Bioinformatics, Microarray, Software
Version	1.38.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 11 years)
License	Artistic-2.0
Depends
Imports	AnnotationDbi, annotate(>= 1.13.7), Biobase(>= 1.99.10), graphics, methods, stats, survival
LinkingTo
Suggests	Biobase(>= 1.99.10), class, hgu95av2.db, methods, tkWidgets, ALL, ROC
SystemRequirements
Enhances
URL
Depends On Me	a4Base, Agi4x44PreProcess, cellHTS, cellHTS2, charm, CNTools, eisa, GeneMeta, MLInterfaces, simpleaffy
Imports Me	affycoretools, affyQCReport, arrayQualityMetrics, Category, crlmm, DESeq, GGBase, GSRI, methylumi, phenoTest, Ringo, RNAinteractMAPK, simpleaffy, tilingArray, XDE
Suggests Me	AffyExpress, annotate, ArrayTools, BiocCaseStudies, BioNet, Category, categoryCompare, clusterStab, codelink, estrogen, factDesign, ffpe, ffpeExampleData, gageData, GOstats, GSEAlm, GSVA, logicFS, lumi, MAQCsubset, MCRestimate, oligo, oneChannelGUI, phyloseq, pvac, qpgraph, rheumaticConditionWOLLBOLD, rtracklayer, siggenes, topGO, VanillaICE, XDE
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	genefilter_1.38.0.tar.gz
Windows Binary	genefilter_1.38.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/genefilter/tree/release-2.10
Package Short Url	http://bioconductor.org/packages/genefilter/
Package Downloads Report	Download Stats

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