bedbaser
This is the development version of bedbaser; for the stable release version, see bedbaser.
All Bioconductor versions of bedbaser
3.24 (devel), 3.23 (release), 3.22, 3.21
A BEDbase client
Bioconductor version: 3.24 · Package version: 1.5.1
A client for BEDbase. bedbaser provides access to the API at api.bedbase.org. It also includes convenience functions to import BED files into GRanges objects and BEDsets into GRangesLists.
Author: Andres Wokaty [aut, cre] 
, Levi Waldron [aut] , NCI [fnd] (GrantNo.: U24CA289073)
Maintainer: Andres Wokaty <andres.wokaty at sph.cuny.edu>
Citation
From within R, enter citation("bedbaser"):
Andres Wokaty, Levi Waldron. bedbaser: A BEDbase client. doi:10.18129/B9.bioc.bedbaser, R package version 1.5.1, https://bioconductor.org/packages/bedbaser.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("bedbaser")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.5.1 |
| License | Artistic License 2.0 |
| URL | https://github.com/waldronlab/bedbaser |
| Bug Reports | https://github.com/waldronlab/bedbaser/issues |
| Last updated | 2026-09-16 |
| In Bioconductor since | BioC 3.21 (R-4.5) (1 year) |
| Downloads rank | 2139 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Software, ThirdPartyClient |
| Package Short Url | https://bioconductor.org/packages/bedbaser/ |
Documentation
| Reference Manual | |
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | bedbaser_1.5.1.tar.gz |
| macOS binary (arm64) | bedbaser_1.5.0.tgz |
| macOS binary (x86_64) | bedbaser_1.5.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/bedbaser |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bedbaser |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.5.0)
Imports: AnVIL (>= 1.16.0), BiocFileCache, curl, dplyr, GenomeInfoDb, GenomicRanges, httr, methods, purrr, rtracklayer, rlang, R.utils, stats, stringr, tibble, tidyr, tools, utils
Suggests: BiocStyle, knitr, liftOver, testthat (>= 3.0.0), withr