isomiRs

This is the development version of isomiRs; for the stable release version, see isomiRs.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Analyze isomiRs and miRNAs from small RNA-seq

Bioconductor version: Development (3.24)

Characterization of miRNAs and isomiRs, clustering and differential expression.

Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut] (CIBERESP - CIBER Epidemiologia y Salud Publica)

Maintainer: Lorena Pantano <lorena.pantano at gmail.com>

Citation (from within R, enter citation("isomiRs")):

Lorena Pantano, Georgia Escaramis. isomiRs: Analyze isomiRs and miRNAs from small RNA-seq. doi:10.18129/B9.bioc.isomiRs, R package version 1.41.0, https://bioconductor.org/packages/isomiRs.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("isomiRs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("isomiRs")

miRNA and isomiR analysis	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, DifferentialExpression, ImmunoOncology, RNASeq, Software, miRNA
Version	1.41.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.4), SummarizedExperiment
Imports	AnnotationDbi, BiocGenerics, Biobase, broom, cluster, cowplot, DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, stringr, S4Vectors, tidyr, tibble
System Requirements
URL
Bug Reports	https://github.com/lpantano/isomiRs/issues

Suggests	knitr, rmarkdown, org.Mm.eg.db, pheatmap, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	isomiRs_1.41.0.tar.gz
Windows Binary (x86_64)	isomiRs_1.41.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	isomiRs_1.41.0.tgz
macOS Binary (sonoma-arm64)	isomiRs_1.41.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/isomiRs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/isomiRs
Package Short Url	https://bioconductor.org/packages/isomiRs/
Package Downloads Report	Download Stats