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eds

This is the released version of eds; for the devel version, see eds.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16

eds: Low-level reader for Alevin EDS format


Bioconductor version: Release (3.23)

This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.

Author: Avi Srivastava [aut, cre], Michael Love [aut, ctb]

Maintainer: Avi Srivastava <asrivastava at cs.stonybrook.edu>

Citation (from within R, enter citation("eds")):

Avi Srivastava, Michael Love. eds: eds: Low-level reader for Alevin EDS format. doi:10.18129/B9.bioc.eds, R package version 1.14.0, https://bioconductor.org/packages/eds.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("eds")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eds")
eds: Low-level reader function for Alevin EDS format HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews GeneExpression, RNASeq, Sequencing, SingleCell, Software
Version1.14.0
In Bioconductor sinceBioC 3.16 (R-4.2) (4 years)
License GPL-2
Depends Matrix
Imports Rcpp
System RequirementsC++11
URLhttps://github.com/mikelove/eds
See More
Suggests knitr, tximportData, testthat (>= 3.0.0)
Linking To Rcpp
Enhances
Depends On Me
Imports Me singleCellTK
Suggests Me tximport
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eds_1.14.0.tar.gz
Windows Binary (x86_64) eds_1.14.0.zip (64-bit only)
macOS Binary (big-sur-x86_64) eds_1.14.0.tgz
macOS Binary (sonoma-arm64) eds_1.14.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/eds
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/eds
Package Short Url https://bioconductor.org/packages/eds/
Package Downloads ReportDownload Stats