infinityFlow

Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions


Bioconductor version: Release (3.19)

Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).

Author: Etienne Becht [cre, aut]

Maintainer: Etienne Becht <etienne.becht at protonmail.com>

Citation (from within R, enter citation("infinityFlow")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("infinityFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("infinityFlow")
Basic usage of the infinityFlow package HTML R Script
Training non default regression models HTML R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, FlowCytometry, Proteomics, SingleCell, Software
Version 1.14.0
In Bioconductor since BioC 3.12 (R-4.0) (4 years)
License GPL-3
Depends R (>= 4.0.0), flowCore
Imports stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost
System Requirements
URL
See More
Suggests knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package infinityFlow_1.14.0.tar.gz
Windows Binary infinityFlow_1.14.0.zip
macOS Binary (x86_64) infinityFlow_1.14.0.tgz
macOS Binary (arm64) infinityFlow_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/infinityFlow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/infinityFlow
Bioc Package Browser https://code.bioconductor.org/browse/infinityFlow/
Package Short Url https://bioconductor.org/packages/infinityFlow/
Package Downloads Report Download Stats