goseq
This is the released version of goseq; for the devel version, see goseq.
All Bioconductor versions of goseq
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6
Gene Ontology analyser for RNA-seq and other length biased data
Bioconductor version: 3.23 · Package version: 1.64.0
Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.
Author: Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre] 
Maintainer: Federico Marini <marinif at uni-mainz.de>
Citation
From within R, enter citation("goseq"):
Matthew Young, Nadia Davidson. goseq: Gene Ontology analyser for RNA-seq and other length biased data. doi:10.18129/B9.bioc.goseq, R package version 1.64.0, https://bioconductor.org/packages/goseq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("goseq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.64.0 |
| License | LGPL (>= 2) |
| URL | https://github.com/federicomarini/goseq |
| Bug Reports | https://github.com/federicomarini/goseq/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.6 (R-2.11) (16 years) |
| Downloads rank | 210 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Annotation, DifferentialExpression, GO, GeneExpression, GeneSetEnrichment, ImmunoOncology, KEGG, Pathways, RNASeq, Sequencing, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/goseq/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("goseq")| goseq User's Guide | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | goseq_1.64.0.tar.gz |
| Windows binary (x86_64) | goseq_1.64.0.zip |
| macOS binary (arm64) | goseq_1.64.0.tgz |
| macOS binary (x86_64) | goseq_1.64.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/goseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/goseq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.11.0), BiasedUrn, geneLenDataBase (>= 1.9.2)
Imports: mgcv, graphics, stats, utils, AnnotationDbi, GO.db, BiocGenerics, methods, rtracklayer, GenomicFeatures, Seqinfo
Suggests: edgeR, org.Hs.eg.db