limma

Depends On Me (55): AgiMicroRna, ASpli, BALLI, BioInsight, BLMA, CCl4, CEDA, cghMCR, ChimpHumanBrainData, clippda, codelink, convert, Cormotif, cp4p, DAAGbio, DEqMS, DRomics, DrugVsDisease, edgeR, EGSEA123, ExiMiR, ExpressionAtlas, Fletcher2013a, fmt, GEOexplorer, HD2013SGI, HTqPCR, IsoformSwitchAnalyzeR, limpa, maPredictDSC, marray, metagenomeSeq, metaseqR2, methylationArrayAnalysis, mpra, NanoTube, octad, PerfMeas, protGear, qpcrNorm, qusage, RBM, ReactomeGSA.data, RNAseq123, RnBeads, Rnits, splineTimeR, TMSig, TOAST, tRanslatome, ttScreening, TurboNorm, variancePartition, wateRmelon, zenith

Imports Me (262): a4Base, ABSSeq, affycoretools, affylmGUI, AMARETTO, animalcules, anota2seq, ArrayExpress, arrayQuality, arrayQualityMetrics, artMS, ATACseqQC, ATACseqTFEA, attract, autonomics, AWFisher, ballgown, barbieQ, BatChef, BatchQC, batchtma, beadarray, BeadArrayUseCases, benchdamic, BERT, biotmle, BloodGen3Module, bnem, BPM, bsseq, BubbleTree, bumphunter, Cascade, casper, ChAMP, cinaR, CleanUpRNAseq, clusterExperiment, CNVRanger, combi, compcodeR, CONFESS, consensusOV, crlmm, csaw, cTRAP, ctsGE, DAMEfinder, damidBind, DaMiRseq, debrowser, DeeDeeExperiment, DELocal, derfinderPlot, DESpace, DEsubs, DExMA, DiffBind, diffcyt, diffHic, diffUTR, diffwrap, DiPALM, distinct, DMRcate, Doscheda, dreamlet, DRIMSeq, dsb, DspikeIn, EGAD, EGSEA, eisaR, eLNNpairedCov, EnrichmentBrowser, epigraHMM, EpiMix, erccdashboard, EventPointer, EWCE, ExpHunterSuite, ExploreModelMatrix, ExpressionNormalizationWorkflow, flowBin, gCrisprTools, GDCRNATools, genefu, GeneSelectMMD, GEOquery, gg4way, gINTomics, Glimma, GRaNIE, GSEMA, GUIDEseq, GWAS.BAYES, GWASbyCluster, HarmonizR, hermes, HERON, hicream, hipathia, HTqPCR, icetea, iCheck, iChip, iCOBRA, ideal, InPAS, isomiRs, KnowSeq, lemur, lfproQC, lilikoi, limmaGUI, limorhyde2, LimROTS, Linnorm, lipidomeR, lipidr, lmdme, markeR, mastR, MatrixQCvis, MBECS, MBQN, mCSEA, MEAL, MetAlyzer, metaMA, MetaProViz, methylKit, MethylMix, mi4p, microbiomeExplorer, miloR, minfi, MIRit, miRLAB, miRtest, missMethyl, MKmisc, MKomics, MLSeq, monocle, MoonlightR, MSclassifR, msImpute, mspms, msqrob2, MSstats, MSstatsTMT, MultiDataSet, muscat, mutscan, NADfinder, NanoMethViz, nethet, netZooR, newIMVC, nlcv, nondetects, NormalyzerDE, notameViz, OLIN, omicRexposome, oncoPredict, OncoSubtype, OVESEG, PAA, PADOG, pairedGSEA, PanomiR, PathoStat, Patterns, pcaExplorer, PECA, PepSetTest, pepStat, phantasus, phenomis, phenoTest, PhosR, plfMA, PolySTest, POMA, POWSC, proBatch, projectR, promor, PRONE, psichomics, qmtools, qPLEXanalyzer, qsea, RANKS, rCGH, RCPA, recountWorkflow, RegEnrich, regsplice, ReportingTools, RFGeneRank, RFLOMICS, RNAseqCovarImpute, roastgsa, robusttseq, ROSeq, RPPanalyzer, RTN, RTopper, saseR, satuRn, scBio, scClassify, scGOclust, scone, scQTLtools, scran, ScreenR, scROSHI, scviR, seqsetvis, shinyDSP, shinyepico, signatureSearchData, singleCellTK, SmartPhos, sparrow, spatialLIBD, speckle, SpNeigh, SPsimSeq, ssizeRNA, standR, STATegRa, Statial, structToolbox, sva, tidyexposomics, timecourse, tinyarray, TOP, ToxicoGx, TPP, TPP2D, transcriptogramer, TransProR, treediff, TVTB, tweeDEseq, unifiedWMWqPCR, VISTA, vsclust, vsn, weitrix, Wrench, wrProteo, XAItest, XYomics, yamss, yarn

Suggests Me (118): ABarray, ADaCGH2, AnnoProbe, aroma.affymetrix, arrays, Biobase, biobroom, BiocSet, BioNet, BioQC, blase, BloodCancerMultiOmics2017, broadSeq, bugphyzz, CAGEWorkflow, canvasXpress, Category, categoryCompare, celaref, CellBench, CellMixS, ChIPpeakAnno, ClassifyR, CMA, coGPS, CONSTANd, corncob, cydar, Damsel, DAPAR, dar, dearseq, DEGreport, derfinder, DEScan2, DGEobj.utils, dyebias, easybio, easyreporting, EnMCB, extraChIPs, fgsea, fishpond, fluentGenomics, gage, GeoTcgaData, GeuvadisTranscriptExpr, geva, ggpicrust2, GiANT, glmGamPoi, GSRI, GSVA, Harman, Heatplus, hexbin, inDAGO, IOBR, iSEEde, isobar, ivygapSE, les, limorhyde, lionessR, lumi, maGUI, mammaPrintData, MAST, methylumi, MLP, MosaiClusteR, msigdb, NACHO, npGSEA, oligo, oppar, pctax, piano, pmartR, PREDA, proDA, protti, puma, QFeatures, qsvaR, raer, randRotation, recountmethylation, RepeatedHighDim, ribosomeProfilingQC, rtracklayer, Rvisdiff, scFeatures, seqgendiff, Seurat, SeuratExplorer, seventyGeneData, signifinder, simphony, simpleSingleCell, spatialHeatmap, SpliceWiz, st, stageR, subSeq, systemPipeR, tadar, TCGAbiolinks, TFEA.ChIP, tidybulk, topconfects, tximeta, tximport, ViSEAGO, volcano3D, wrGraph, wrMisc, zFPKM