Analyzing DNA Microarray Data Using Bioconductor

Sandrine Dudoit and Robert Gentleman
Fred Hutchinson Cancer Research Center
December 4-6, 2002

Schedule

Wednesday, December 4th

AM

Outline (Slides in pdf)
Introduction to Genome Biology (Slides in pdf)
Introduction to DNA Microarray Technologies (Slides in pdf)

PM

Pre-processing DNA Microarray Data (Slides in pdf)
LAB: R and Bioconductor Basics (Slides in pdf, Seattle R package: Lab1.Rnw)

Thursday, December 5th

AM

Using Bioconductor Packages (Slides in pdf)
LAB: Using Bioconductor Packages Seattle R package: Lab1.Rnw)

PM

LAB: Bioconductor Packages for Pre-processing DNA Microarray Data Seattle R package: Lab4a.Rnw, Lab4b.Rnw)
Only one PM session

Friday, December 6th

AM

Distances (Slides in pdf), Cluster Analysis (Slides in pdf)
LAB: Distances, Cluster Analysis Seattle R package: Lab3.Rnw)

PM

Feature Selection, Classification
LAB: Feature Selection, Classification Seattle R package: Lab5.Rnw)

Fred Hutchinson Cancer Research Center