2012-05-10 ~ 2012-05-11
R / Bioconductor for High-Throughput Sequence Analysis introduces essential concepts and work flows in the manipulation and statistical analysis of sequence data. Topics covered include: essential R skills; working with sequences and alignments; RNA-seq differential expression work flows; aspects of ChIP-seq; and annotation of genes, genomes and variants. Participants engage in lectures and hands-on exercises. Participants require a laptop with internet access and a current browser.
Install the course package as follows (under R-2.15):
source("http://bioconductor.org/scratch-repos/pkgInstall.R") pkgInstall("SeattleIntro2012", type="source")
Bioconductor's stable, semi-annual release:
Common Bioconductor workflows include: