ExploreModelMatrix
Graphical Exploration of Design Matrices
Bioconductor version: 3.23 · Package version: 1.24.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExploreModelMatrix")Details
| Maintainer | Charlotte Soneson <charlottesoneson@gmail.com> |
| Author | Charlotte Soneson [aut, cre] (ORCID: <https://orcid.org/0000-0003-3833-2169>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>), Michael Love [aut] (ORCID: <https://orcid.org/0000-0001-8401-0545>), Florian Geier [aut] (ORCID: <https://orcid.org/0000-0002-9076-9264>), Michael Stadler [aut] (ORCID: <https://orcid.org/0000-0002-2269-4934>) |
| License | MIT + file LICENSE |
| URL | https://github.com/csoneson/ExploreModelMatrix |
| Bug Reports | https://github.com/csoneson/ExploreModelMatrix/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, ExperimentalDesign, Regression, ShinyApps, Software |
| Package Short Url | https://bioconductor.org/packages/ExploreModelMatrix/ |
Citation
From within R, enter citation("ExploreModelMatrix"):
Charlotte Soneson, Federico Marini, Michael Love, Florian Geier, Michael Stadler. ExploreModelMatrix: Graphical Exploration of Design Matrices. doi:10.18129/B9.bioc.ExploreModelMatrix, R package version 1.24.0, https://bioconductor.org/packages/ExploreModelMatrix.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
- Interactive exploration of design matrices with ExploreModelMatrix
- Deploying ExploreModelMatrix on a Shiny Server
Download
Follow the installation instructions to use this package in your R session.
| Source package | ExploreModelMatrix_1.24.0.tar.gz |
| Windows binary (x86_64) | ExploreModelMatrix_1.24.0.zip |
| macOS binary (arm64) | ExploreModelMatrix_1.24.0.tgz |
| macOS binary (x86_64) | ExploreModelMatrix_1.24.0.tgz |
Dependencies
Imports: shiny (>= 1.5.0), shinydashboard, DT, cowplot, utils, dplyr, magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales, tibble, MASS, limma, S4Vectors, shinyjs, rlang
Suggests: testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle
Reverse dependencies
Suggests Me (1): msqrob2