Category

Category Analysis

Bioconductor version: Development (3.0)

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Category")

To cite this package in a publication, start R and enter:

    citation("Category")

Documentation

PDF R Script Using Categories to Analyze Microarray Data
PDF R Script Using Chromosome Bands as Categories
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 2.31.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License Artistic-2.0
Depends BiocGenerics, AnnotationDbi, Biobase, Matrix, GO.db, methods
Imports BiocGenerics, graph, methods, Biobase, AnnotationDbi, RBGL, GSEABase(>= 1.19.3), genefilter, annotate(>= 1.15.6), stats, utils
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice, graph, Biobase, genefilter, methods, RUnit, org.Sc.sgd.db, GOstats
System Requirements
URL
Depends On Me GOstats, PCpheno
Imports Me categoryCompare, cellHTS2, eisa, gCMAP, GOstats, interactiveDisplay, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools
Suggests Me BiocCaseStudies, cellHTS, GSEAlm, MmPalateMiRNA

Package Downloads

Package Source Category_2.31.0.tar.gz
Windows Binary Category_2.31.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Category_2.31.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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