To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DirichletMultinomial")

In most cases, you don't need to download the package archive at all.

DirichletMultinomial

 

   

This is the development version of DirichletMultinomial; for the stable release version, see DirichletMultinomial.

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

Bioconductor version: Development (3.4)

Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.

Author: Martin Morgan <martin.morgan at roswellpark.org>

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("DirichletMultinomial")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DirichletMultinomial")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DirichletMultinomial")

 

PDF R Script An introduction to DirichletMultinomial
PDF   Reference Manual

Details

biocViews Classification, Clustering, Metagenomics, Microbiome, Sequencing, Software
Version 1.15.0
In Bioconductor since BioC 2.11 (R-2.15) (4 years)
License LGPL-3
Depends S4Vectors, IRanges
Imports stats4, methods, BiocGenerics
LinkingTo
Suggests lattice, parallel, MASS, RColorBrewer, xtable
SystemRequirements gsl
Enhances
URL
Depends On Me
Imports Me TFBSTools
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DirichletMultinomial_1.15.0.tar.gz
Windows Binary DirichletMultinomial_1.15.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) DirichletMultinomial_1.15.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/DirichletMultinomial
Package Short Url http://bioconductor.org/packages/DirichletMultinomial/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: