To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Doscheda")

In most cases, you don't need to download the package archive at all.

Doscheda

DOI: 10.18129/B9.bioc.Doscheda    

This is the development version of Doscheda; to use it, please install the devel version of Bioconductor.

A DownStream Chemo-Proteomics Analysis Pipeline

Bioconductor version: Development (3.6)

Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment.

Author: Bruno Contrino, Dr Piero Ricchiuto

Maintainer: Bruno Contrino <br1contrino at yahoo.co.uk>

Citation (from within R, enter citation("Doscheda")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Doscheda")

Documentation

HTML R Script Doscheda
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Regression, Software
Version 0.99.4
License GPL-3
Depends R (>= 3.4)
Imports methods, drc, stats, httr, jsonlite, reshape2, vsn, affy, limma, stringr, ggplot2, graphics, grDevices, calibrate, corrgram, gridExtra, DT, shiny, shinydashboard, readxl, d3heatmap, prodlim, matrixStats
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Doscheda_0.99.4.tar.gz
Windows Binary Doscheda_0.99.4.zip
Mac OS X 10.11 (El Capitan) Doscheda_0.99.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/Doscheda
Package Short Url http://bioconductor.org/packages/Doscheda/
Package Downloads Report Download Stats

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