MotifDb

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Bioconductor version: Development (3.0)

More than 2000 annotated position frequency matrices from five public source, for multiple organisms

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MotifDb")

To cite this package in a publication, start R and enter:

    citation("MotifDb")

Documentation

PDF R Script MotifDb Overview
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GenomicSequence, MotifAnnotation, Software
Version 1.7.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0 | file LICENSE
Depends R (>= 2.15.0), methods, IRanges, Biostrings
Imports BiocGenerics, rtracklayer
Suggests RUnit, MotIV, seqLogo
System Requirements
URL
Depends On Me
Imports Me rTRMui
Suggests Me motifStack, PWMEnrich, rTRM, vtpnet

Package Downloads

Package Source MotifDb_1.7.0.tar.gz
Windows Binary MotifDb_1.7.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MotifDb_1.7.0.tgz
Mac OS X 10.9 (Mavericks)
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