STRINGdb

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Bioconductor version: Development (3.0)

The STRINGdb package provides a user-friendly interface to the STRING protein-protein interactions database ( http://www.string-db.org ).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Alexander Roth <alexander.roth at gmail.com>, Christian Von Mering <mering at imls.uzh.ch>, Michael Kuhn <michael.kuhn at biotec.tu-dresden.de>, Lars J Jensen <lars.juhl.jensen at gmail.com>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("STRINGdb")

Citation (from within R, enter citation("STRINGdb")):

Documentation

PDF R Script STRINGdb Vignette
PDF   Reference Manual

Details

biocViews Network, Software
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends R (>= 2.14.0), png, sqldf, plyr, igraph, RCurl, plotrix, methods
Imports
Suggests RUnit, BiocGenerics
System Requirements
URL
Depends On Me scsR
Imports Me
Suggests Me

Package Downloads

Package Source STRINGdb_1.3.0.tar.gz
Windows Binary STRINGdb_1.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) STRINGdb_1.3.0.tgz
Mac OS X 10.9 (Mavericks) STRINGdb_1.3.0.tgz
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