Somatic Signatures

Bioconductor version: Development (3.0)

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).

Author: Julian Gehring, with contribution of Bernd Fischer (EMBL Heidelberg)

Maintainer: Julian Gehring <julian.gehring at>

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biocViews Cancer, Clustering, GenomicVariation, HighThroughputSequencingData, PrinicpalComponent, Sequencing, Software, SomaticMutation, StatisticalMethod, Visualization
Version 1.1.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 3.0.2)
Imports GenomicRanges, IRanges, VariantAnnotation, Biostrings, ggplot2, ggbio, stringr, reshape2, NMF, methods, pcaMethods, gtools
Suggests testthat, knitr, BiocStyle, parallel, BSgenome.Hsapiens.UCSC.hg19, SomaticCancerAlterations, h5vc, h5vcData, fastICA
System Requirements
Depends On Me
Imports Me Rariant
Suggests Me

Package Downloads

Package Source SomaticSignatures_1.1.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SomaticSignatures_1.1.0.tgz
Mac OS X 10.9 (Mavericks)
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