annaffy

Annotation tools for Affymetrix biological metadata

Bioconductor version: Development (3.0)

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author: Colin A. Smith <annaffy at colinsmith.org>

Maintainer: Colin A. Smith <annaffy at colinsmith.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("annaffy")

To cite this package in a publication, start R and enter:

    citation("annaffy")

Documentation

PDF R Script annaffy Primer
PDF   Reference Manual

Details

biocViews Annotation, GO, Microarray, OneChannel, Pathways, ReportWriting, Software
Version 1.37.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License LGPL
Depends R (>= 2.5.0), methods, Biobase, GO.db, KEGG.db
Imports AnnotationDbi(>= 0.1.15)
Suggests hgu95av2.db, multtest, tcltk
System Requirements
URL
Depends On Me a4Base, a4Reporting, PGSEA, webbioc
Imports Me affycoretools
Suggests Me AffyExpress, ArrayTools, BiocCaseStudies, oneChannelGUI

Package Downloads

Package Source annaffy_1.37.0.tar.gz
Windows Binary annaffy_1.37.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) annaffy_1.37.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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