To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("annaffy")

In most cases, you don't need to download the package archive at all.

annaffy

 

   

This is the development version of annaffy; for the stable release version, see annaffy.

Annotation tools for Affymetrix biological metadata

Bioconductor version: Development (3.3)

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author: Colin A. Smith <colin at colinsmith.org>

Maintainer: Colin A. Smith <colin at colinsmith.org>

Citation (from within R, enter citation("annaffy")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("annaffy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("annaffy")

 

PDF annaffy Primer
PDF   Reference Manual

Details

biocViews Annotation, GO, Microarray, OneChannel, Pathways, ReportWriting, Software
Version 1.43.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License LGPL
Depends R (>= 2.5.0), methods, Biobase, GO.db, KEGG.db
Imports AnnotationDbi(>= 0.1.15), DBI
LinkingTo
Suggests hgu95av2.db, multtest, tcltk
SystemRequirements
Enhances
URL
Depends On Me a4Base, a4Reporting, PGSEA, webbioc
Imports Me
Suggests Me AffyExpress, ArrayTools, BiocCaseStudies, oneChannelGUI
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source annaffy_1.43.1.tar.gz
Windows Binary annaffy_1.43.1.zip
Mac OS X 10.6 (Snow Leopard) annaffy_1.41.1.tgz
Mac OS X 10.9 (Mavericks) annaffy_1.43.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/annaffy
Package Short Url http://bioconductor.org/packages/annaffy/
Package Downloads Report Download Stats

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