Tools for performing taxonomic assignment.

Bioconductor version: Development (3.0)

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script clst
PDF R Script clstutils
PDF   Reference Manual


biocViews Classification, QualityControl, Sequencing, Software, Visualization
Version 1.13.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R (>= 2.10), clst, rjson, ape
Imports lattice, RSQLite
Suggests RUnit, RSVGTipsDevice
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source clstutils_1.13.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) clstutils_1.13.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center