To install this package, start R and enter:

## try http:// if https:// URLs are not supported

In most cases, you don't need to download the package archive at all.




This is the development version of genefu; for the stable release version, see genefu.

Computation of Gene Expression-Based Signatures in Breast Cancer

Bioconductor version: Development (3.4)

Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.

Author: Deena M.A. Gendoo, Natchar Ratanasirigulchai, Markus S. Schroder, Laia Pare, Joel S. Parker, Aleix Prat, and Benjamin Haibe-Kains

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at>, Markus Schroeder <markus.schroeder at>

Citation (from within R, enter citation("genefu")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script genefu An Introduction (HowTo)
PDF   Reference Manual


biocViews Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization
Version 2.5.2
In Bioconductor since BioC 2.8 (R-2.13) (5.5 years)
License Artistic-2.0
Depends survcomp, mclust, limma, biomaRt, iC10, AIMS, R (>= 2.10)
Imports amap
Suggests GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival
Depends On Me pbcmc
Imports Me
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source genefu_2.5.2.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks) genefu_2.5.2.tgz
Subversion source (username/password: readonly)
Git source
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: