DOI: 10.18129/B9.bioc.gwascat    

This is the development version of gwascat; for the stable release version, see gwascat.

representing and modeling data in the EMBL-EBI GWAS catalog

Bioconductor version: Development (3.7)

Represent and model data in the EMBL-EBI GWAS catalog.

Author: VJ Carey <stvjc at>

Maintainer: VJ Carey <stvjc at>

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PDF R Script gwascat -- exploring NHGRI GWAS catalog
HTML R Script gwascat: exploring GWAS results using the experimental factor ontology
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biocViews Genetics, Software
Version 2.11.2
In Bioconductor since BioC 2.10 (R-2.15) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0), Homo.sapiens
Imports methods, BiocGenerics, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges(>= 1.29.6), snpStats, Biostrings, Rsamtools, rtracklayer, gQTLstats, Gviz, VariantAnnotation, AnnotationHub, AnnotationDbi, GenomicFeatures, graph, ggbio, ggplot2, SummarizedExperiment
Suggests DO.db, DT, utils, knitr, RBGL, RUnit
Enhances SNPlocs.Hsapiens.dbSNP144.GRCh37
Depends On Me vtpnet
Imports Me
Suggests Me GenomicScores, gQTLBase, gQTLstats, grasp2db, hmdbQuery
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