Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge

Bioconductor version: Development (3.0)

This package implements the classification pipeline of the best overall team (Team221) in the IMPROVER Diagnostic Signature Challenge. Additional functionality is added to compare 27 combinations of data preprocessing, feature selection and classifier types.

Author: Adi Laurentiu Tarca <atarca at>

Maintainer: Adi Laurentiu Tarca <atarca at>

To install this package, start R and enter:


Citation (from within R, enter citation("maPredictDSC")):


PDF R Script maPredictDSC
PDF   Reference Manual


biocViews Classification, Microarray, Software
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends R (>= 2.15.0), MASS, affy, limma, gcrma, ROC, class, e1071, caret, hgu133plus2.db, ROCR, AnnotationDbi, LungCancerACvsSCCGEO
Suggests parallel
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source maPredictDSC_1.3.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) maPredictDSC_1.3.0.tgz
Mac OS X 10.9 (Mavericks) maPredictDSC_1.3.0.tgz
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