To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methInheritSim")

In most cases, you don't need to download the package archive at all.

methInheritSim

DOI: 10.18129/B9.bioc.methInheritSim    

This is the development version of methInheritSim; to use it, please install the devel version of Bioconductor.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: Development (3.6)

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid DeschĂȘnes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Citation (from within R, enter citation("methInheritSim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methInheritSim")

Documentation

HTML R Script Simulating Whole-Genome Inherited Bisulphite Sequencing Data
PDF   Reference Manual
Text   NEWS

Details

biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version 0.99.12
In Bioconductor since BioC 3.6 (R-3.4)
License Artistic-2.0
Depends R (>= 3.4)
Imports methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
SystemRequirements
Enhances
URL https://github.com/belleau/methInheritSim
BugReports https://github.com/belleau/methInheritSim/issues
Depends On Me
Imports Me
Suggests Me methylInheritance
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methInheritSim_0.99.12.tar.gz
Windows Binary methInheritSim_0.99.12.zip
Mac OS X 10.11 (El Capitan) methInheritSim_0.99.12.tgz
Source Repository git clone https://git.bioconductor.org/packages/methInheritSim
Package Short Url http://bioconductor.org/packages/methInheritSim/
Package Downloads Report Download Stats

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