pdInfoBuilder

Platform Design Information Package Builder

Bioconductor version: Development (3.0)

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Benilton Carvalho with contributions by Vince Carey, Matt Settles and Kristof de Beuf

Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pdInfoBuilder")

Citation (from within R, enter citation("pdInfoBuilder")):

Documentation

PDF R Script Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF R Script PDInfo Package Building Affymetrix Mapping Chips
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Infrastructure, Software
Version 1.29.0
In Bioconductor since BioC 2.0 (R-2.5)
License Artistic-2.0
Depends R (>= 2.15.0), methods, Biobase(>= 2.17.7), RSQLite (>= 0.11.1), affxparser(>= 1.29.12), oligo(>= 1.27.3)
Imports Biostrings(>= 2.25.12), IRanges(>= 1.15.44)
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me maqcExpression4plex

Package Downloads

Package Source pdInfoBuilder_1.29.0.tar.gz
Windows Binary pdInfoBuilder_1.29.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) pdInfoBuilder_1.29.0.tgz
Mac OS X 10.9 (Mavericks) pdInfoBuilder_1.29.0.tgz
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