To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pdInfoBuilder")

In most cases, you don't need to download the package archive at all.

pdInfoBuilder

 

   

This is the development version of pdInfoBuilder; for the stable release version, see pdInfoBuilder.

Platform Design Information Package Builder

Bioconductor version: Development (3.4)

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho

Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com>

Citation (from within R, enter citation("pdInfoBuilder")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pdInfoBuilder")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pdInfoBuilder")

 

PDF Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF PDInfo Package Building Affymetrix Mapping Chips
PDF   Reference Manual

Details

biocViews Annotation, Infrastructure, Software
Version 1.37.1
In Bioconductor since BioC 2.0 (R-2.5) (9.5 years)
License Artistic-2.0
Depends R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5)
Imports Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me maqcExpression4plex
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source pdInfoBuilder_1.37.1.tar.gz
Windows Binary pdInfoBuilder_1.37.1.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) pdInfoBuilder_1.37.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/pdInfoBuilder
Package Short Url http://bioconductor.org/packages/pdInfoBuilder/
Package Downloads Report Download Stats

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