DOI: 10.18129/B9.bioc.rGADEM    

This is the development version of rGADEM; for the stable release version, see rGADEM.

de novo motif discovery

Bioconductor version: Development (3.9)

rGADEM is an efficient de novo motif discovery tool for large-scale genomic sequence data. It is an open-source R package, which is based on the GADEM software.

Author: Arnaud Droit, Raphael Gottardo, Gordon Robertson and Leiping Li

Maintainer: Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>

Citation (from within R, enter citation("rGADEM")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("rGADEM", version = "3.9")


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script The rGADEM users guide
PDF   Reference Manual


biocViews ChIPSeq, ChIPchip, Microarray, MotifDiscovery, Sequencing, Software
Version 2.31.0
In Bioconductor since BioC 2.6 (R-2.11) (8.5 years)
License Artistic-2.0
Depends R (>= 2.11.0), Biostrings, IRanges, BSgenome, methods, seqLogo
Imports Biostrings, IRanges, methods, graphics, seqLogo
Suggests BSgenome.Hsapiens.UCSC.hg19
Depends On Me
Imports Me MotIV
Suggests Me universalmotif
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rGADEM_2.31.0.tar.gz
Windows Binary rGADEM_2.31.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) rGADEM_2.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rGADEM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rGADEM
Package Short Url http://bioconductor.org/packages/rGADEM/
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