To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rnaseqcomp")

In most cases, you don't need to download the package archive at all.

rnaseqcomp

DOI: 10.18129/B9.bioc.rnaseqcomp    

This is the development version of rnaseqcomp; for the stable release version, see rnaseqcomp.

Benchmarks for RNA-seq Quantification Pipelines

Bioconductor version: Development (3.6)

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Author: Mingxiang Teng and Rafael A. Irizarry

Maintainer: Mingxiang Teng <tengmx at gmail.com>

Citation (from within R, enter citation("rnaseqcomp")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rnaseqcomp")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaseqcomp")

 

PDF R Script The rnaseqcomp user's guide
PDF   Reference Manual
Text   NEWS

Details

biocViews QualityControl, RNASeq, Software, Visualization
Version 1.7.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL-3
Depends R (>= 3.2.0)
Imports RColorBrewer, methods
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/tengmx/rnaseqcomp
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rnaseqcomp_1.7.0.tar.gz
Windows Binary rnaseqcomp_1.7.0.zip
Mac OS X 10.11 (El Capitan) rnaseqcomp_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rnaseqcomp
Package Short Url http://bioconductor.org/packages/rnaseqcomp/
Package Downloads Report Download Stats

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