DOI: 10.18129/B9.bioc.tilingArray  

This is the development version of tilingArray; for the stable release version, see tilingArray.

Transcript mapping with high-density oligonucleotide tiling arrays

Bioconductor version: Development (3.18)

The package provides functionality that can be useful for the analysis of high-density tiling microarray data (such as from Affymetrix genechips) for measuring transcript abundance and architecture. The main functionalities of the package are: 1. the class 'segmentation' for representing partitionings of a linear series of data; 2. the function 'segment' for fitting piecewise constant models using a dynamic programming algorithm that is both fast and exact; 3. the function 'confint' for calculating confidence intervals using the strucchange package; 4. the function 'plotAlongChrom' for generating pretty plots; 5. the function 'normalizeByReference' for probe-sequence dependent response adjustment from a (set of) reference hybridizations.

Author: Wolfgang Huber, Zhenyu Xu, Joern Toedling with contributions from Matt Ritchie

Maintainer: Zhenyu Xu <zxu at embl.de>

Citation (from within R, enter citation("tilingArray")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Microarray, OneChannel, Preprocessing, Software, Visualization
Version 1.79.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License Artistic-2.0
Depends R (>= 2.11.0), Biobase, methods, pixmap
Imports strucchange, affy, vsn, genefilter, RColorBrewer, grid, stats4
Depends On Me davidTiling
Imports Me ADaCGH2, snapCGH
Suggests Me
Links To Me
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Source Package
Windows Binary tilingArray_1.79.0.zip
macOS Binary (x86_64) tilingArray_1.79.0.tgz
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Bioc Package Browser https://code.bioconductor.org/browse/tilingArray/
Package Short Url https://bioconductor.org/packages/tilingArray/
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