To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")

In most cases, you don't need to download the package archive at all.

XtraSNPlocs.Hsapiens.dbSNP144.GRCh37

DOI: 10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP144.GRCh37    

This is the development version of XtraSNPlocs.Hsapiens.dbSNP144.GRCh37; for the stable release version, see XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.

Extra SNP locations for Homo sapiens (dbSNP Build 144)

Bioconductor version: Development (3.6)

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs
Version 0.99.12
License Artistic-2.0
Depends R (>= 2.10), BSgenome
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url http://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: