To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phastCons100way.UCSC.hg19")

In most cases, you don't need to download the package archive at all.

phastCons100way.UCSC.hg19

DOI: 10.18129/B9.bioc.phastCons100way.UCSC.hg19    

This is the development version of phastCons100way.UCSC.hg19; for the stable release version, see phastCons100way.UCSC.hg19.

UCSC phastCons conservation scores for hg19

Bioconductor version: Development (3.6)

Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.

Author: Robert Castelo

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("phastCons100way.UCSC.hg19")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("phastCons100way.UCSC.hg19")

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, GScores, Genetics, Homo_sapiens
Version 3.5.0
License Artistic-2.0
Depends R (>= 3.0.0), GenomicScores(>= 0.99.0)
Imports utils, S4Vectors, IRanges, GenomicRanges, BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me RareVariantVis
Suggests Me ATACseqQC, GenomicScores, VariantFiltering

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phastCons100way.UCSC.hg19_3.5.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url http://bioconductor.org/packages/phastCons100way.UCSC.hg19/
Package Downloads Report Download Stats

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