nanotubes

DOI: 10.18129/B9.bioc.nanotubes    

This is the development version of nanotubes; to use it, please install the devel version of Bioconductor.

Mouse nanotube CAGE data

Bioconductor version: Development (3.10)

Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).

Author: Malte Thodberg

Maintainer: Malte Thodberg <maltethodberg at gmail.com>

Citation (from within R, enter citation("nanotubes")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("nanotubes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nanotubes")

 

HTML R Script nanotubes
PDF   Reference Manual

Details

biocViews ExperimentData, ExpressionData, SequencingData
Version 1.1.0
License GPL-3
Depends R (>= 3.6)
Imports
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR
SystemRequirements
Enhances
URL https://github.com/MalteThodberg/nanotubes
BugReports https://github.com/MalteThodberg/nanotubes/issues
Depends On Me CAGEWorkflow
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nanotubes_1.1.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/nanotubes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nanotubes
Package Short Url http://bioconductor.org/packages/nanotubes/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: