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pasilla

 

   

This is the development version of pasilla; for the stable release version, see pasilla.

Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.

Bioconductor version: Development (3.4)

This package provides per-exon and per-gene read counts computed for selected genes from RNA-seq data that were presented in the article "Conservation of an RNA regulatory map between Drosophila and mammals" by Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR, Genome Res. 2011 Feb;21(2):193-202, Epub 2010 Oct 4, PMID: 20921232. The experiment studied the effect of RNAi knockdown of Pasilla, the Drosophila melanogaster ortholog of mammalian NOVA1 and NOVA2, on the transcriptome. The package vignette describes how the data provided here were derived from the RNA-Seq read sequence data that are provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181.

Author: Wolfgang Huber, Alejandro Reyes

Maintainer: Alejandro Reyes <reyes at embl.de>

Citation (from within R, enter citation("pasilla")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pasilla")

Documentation

PDF   Reference Manual

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, Genome, RNASeqData
Version 1.0.2
License LGPL
Depends R (>= 3.3.0)
Imports
LinkingTo
Suggests DEXSeq, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me BADER, DESeq, DESeq2, DEXSeq, genefilter, GenomicRanges, pasillaBamSubset, regionReport, ReportingTools
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source pasilla_1.0.2.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/pasilla/
Package Downloads Report Download Stats

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