AIMS

DOI: 10.18129/B9.bioc.AIMS    

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Bioconductor version: Release (3.8)

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Author: Eric R. Paquet, Michael T. Hallett

Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>

Citation (from within R, enter citation("AIMS")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("AIMS", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AIMS")

 

PDF R Script AIMS An Introduction (HowTo)
PDF   Reference Manual
Text   README

Details

biocViews Classification, GeneExpression, Microarray, RNASeq, Software
Version 1.14.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License Artistic-2.0
Depends R (>= 2.10), e1071, Biobase
Imports
LinkingTo
Suggests breastCancerVDX, hgu133a.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL http://www.bci.mcgill.ca/AIMS
Depends On Me genefu
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AIMS_1.14.0.tar.gz
Windows Binary AIMS_1.14.0.zip
Mac OS X 10.11 (El Capitan) AIMS_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AIMS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AIMS
Package Short Url http://bioconductor.org/packages/AIMS/
Package Downloads Report Download Stats

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