To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AffyRNADegradation")

In most cases, you don't need to download the package archive at all.

AffyRNADegradation

Analyze and correct probe positional bias in microarray data due to RNA degradation

Bioconductor version: Release (2.14)

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Author: Mario Fasold

Maintainer: Mario Fasold <fasold at izbi.uni-leipzig.de>

Citation (from within R, enter citation("AffyRNADegradation")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AffyRNADegradation")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyRNADegradation")

 

PDF R Script AffyRNADegradation Example
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software
Version 1.10.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-2
Depends R (>= 2.9.0), methods, affy
Imports
Suggests AmpAffyExample
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AffyRNADegradation_1.10.0.tar.gz
Windows Binary AffyRNADegradation_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AffyRNADegradation_1.10.0.tgz
Mac OS X 10.9 (Mavericks) AffyRNADegradation_1.10.0.tgz
Browse/checkout source (username/password: readonly)
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