AnnotationFilter

DOI: 10.18129/B9.bioc.AnnotationFilter    

Facilities for Filtering Bioconductor Annotation Resources

Bioconductor version: Release (3.8)

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

Author: Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationFilter")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("AnnotationFilter", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationFilter")

 

HTML R Script Facilities for Filtering Bioconductor Annotation resources
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Annotation, Infrastructure, Software
Version 1.6.0
In Bioconductor since BioC 3.5 (R-3.4) (1.5 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports utils, methods, GenomicRanges, lazyeval
LinkingTo
Suggests BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db
SystemRequirements
Enhances
URL https://github.com/Bioconductor/AnnotationFilter
BugReports https://github.com/Bioconductor/AnnotationFilter/issues
Depends On Me chimeraviz, ensembldb, Organism.dplyr
Imports Me biovizBase, ggbio, Pbase, TVTB
Suggests Me TFutils, TxRegInfra, wiggleplotr
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AnnotationFilter_1.6.0.tar.gz
Windows Binary AnnotationFilter_1.6.0.zip
Mac OS X 10.11 (El Capitan) AnnotationFilter_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/AnnotationFilter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/AnnotationFilter
Package Short Url http://bioconductor.org/packages/AnnotationFilter/
Package Downloads Report Download Stats

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