AnnotationForge

Code for Building Annotation Database Packages

Bioconductor version: Release (2.14)

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Herve Pages

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

Citation (from within R, enter citation("AnnotationForge")):

Documentation

PDF R Script AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF R Script Creating probe packages
PDF R Script SQLForge: An easy way to create a new annotation package with a standard database schema.
HTML R Script Making New Organism Packages
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Infrastructure, Software
Version 1.6.1
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.1.13), Biobase(>= 1.17.0), AnnotationDbi(>= 1.19.15), org.Hs.eg.db
Imports methods, utils, DBI, RSQLite, BiocGenerics, Biobase
Suggests DBI (>= 0.2-4), RSQLite (>= 0.6-4), XML, RCurl, hgu95av2.db, human.db0, affy, Homo.sapiens, hom.Hs.inp.db, GO.db, BiocStyle, knitr
System Requirements
URL
Depends On Me
Imports Me GGHumanMethCancerPanelv1.db, GOstats, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, illuminaMousev1.db, illuminaMousev1p1.db, illuminaMousev2.db, illuminaRatv1.db
Suggests Me AnnotationDbi

Package Downloads

Package Source AnnotationForge_1.6.1.tar.gz
Windows Binary AnnotationForge_1.6.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AnnotationForge_1.6.1.tgz
Mac OS X 10.9 (Mavericks) AnnotationForge_1.6.1.tgz
Package Downloads Report Download Stats

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