To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BCRANK")

In most cases, you don't need to download the package archive at all.

BCRANK

 

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: Release (3.1)

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Citation (from within R, enter citation("BCRANK")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BCRANK")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")

 

PDF R Script BCRANK
PDF   Reference Manual

Details

biocViews GeneRegulation, MotifDiscovery, Software
Version 1.30.0
In Bioconductor since BioC 2.2 (R-2.7) (7.5 years)
License GPL-2
Depends methods
Imports Biostrings
LinkingTo
Suggests seqLogo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BCRANK_1.30.0.tar.gz
Windows Binary BCRANK_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BCRANK_1.30.0.tgz
Mac OS X 10.9 (Mavericks) BCRANK_1.30.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/BCRANK/tree/release-3.1
Package Short Url http://bioconductor.org/packages/BCRANK/
Package Downloads Report Download Stats

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