To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CAFE")

In most cases, you don't need to download the package archive at all.

CAFE

Chromosmal Aberrations Finder in Expression data

Bioconductor version: Release (3.0)

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Citation (from within R, enter citation("CAFE")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CAFE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")

 

PDF R Script Manual
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version 1.2.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
Suggests RUnit, BiocGenerics, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CAFE_1.2.0.tar.gz
Windows Binary CAFE_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CAFE_1.2.0.tgz
Mac OS X 10.9 (Mavericks) CAFE_1.2.0.tgz
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