ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
| Author | Peter Humburg |
| Maintainer | Peter Humburg |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")
| Introduction to ChIPseqR | R Script | |
|---|---|---|
| Reference Manual |
| biocViews | |
|---|---|
| Depends |
R
,
ShortRead
,
methods
|
| Imports |
Biostrings
,
fBasics
,
GenomicRanges
,
graphics
,
grDevices
,
HilbertVis
,
IRanges
,
methods
,
ShortRead
,
stats
,
timsac
,
utils
|
| Suggests | |
| System Requirements | |
| License | GPL (>= 2) |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
| Package source | ChIPseqR_1.2.0.tar.gz |
|---|---|
| Windows 32-bit binary | ChIPseqR_1.2.0.zip |
| Windows 64-bit binary | ChIPseqR_1.2.0.zip |
| MacOS X 10.5 (Leopard) binary | ChIPseqR_1.2.0.tgz |
| Package Downloads Report | Downloads Stats |