To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")

In most cases, you don't need to download the package archive at all.

ChIPseqR

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: Release (3.0)

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at well.ox.ac.uk>

Citation (from within R, enter citation("ChIPseqR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPseqR")

 

PDF R Script Introduction to ChIPseqR
PDF   Reference Manual

Details

biocViews ChIPSeq, Infrastructure, Software
Version 1.20.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 2)
Depends R (>= 2.10.0), methods, BiocGenerics, S4Vectors, ShortRead
Imports Biostrings, fBasics, GenomicRanges, graphics, grDevices, HilbertVis, IRanges, methods, ShortRead, stats, timsac, utils
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ChIPseqR_1.20.0.tar.gz
Windows Binary ChIPseqR_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ChIPseqR_1.20.0.tgz
Mac OS X 10.9 (Mavericks) ChIPseqR_1.20.0.tgz
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