ChIPsim

Simulation of ChIP-seq experiments

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author	Peter Humburg
Maintainer	Peter Humburg

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChIPsim")

Documentation

Simulating ChIP-seq experiments	PDF	R Script
Reference Manual

Details

biocViews	Infrastructure , Bioinformatics , ChIPseq
Depends	Biostrings
Imports	IRanges , Biostrings , ShortRead , graphics , methods , stats , utils
Suggests	actuar , zoo
System Requirements
License	GPL (>= 2)
URL
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Package Downloads

Package source	ChIPsim_1.2.0.tar.gz
Windows 32-bit binary	ChIPsim_1.2.0.zip
Windows 64-bit binary	ChIPsim_1.2.0.zip
MacOS X 10.5 (Leopard) binary	ChIPsim_1.2.0.tgz
Package Downloads Report	Downloads Stats