To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

In most cases, you don't need to download the package archive at all.

DECIPHER

Database Enabled Code for Ideal Probe Hybridization Employing R

Bioconductor version: Release (3.0)

A toolset for deciphering and managing biological sequences.

Author: Erik Wright

Maintainer: Erik Wright <DECIPHER at cae.wisc.edu>

Citation (from within R, enter citation("DECIPHER")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DECIPHER")

 

PDF R Script Design Group-Specific FISH Probes
PDF R Script Design Group-Specific Primers
PDF R Script Design Microarray Probes
PDF R Script Finding Chimeric Sequences
PDF R Script Getting Started DECIPHERing
PDF R Script The Art of Multiple Sequence Alignment in R
PDF   Reference Manual

Details

biocViews Alignment, Clustering, DataImport, Genetics, Microarray, QualityControl, Sequencing, Software, Visualization, qPCR
Version 1.12.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL-3
Depends R (>= 2.13.0), Biostrings(>= 2.31.9), RSQLite (>= 0.9), stats, parallel
Imports methods, S4Vectors, IRanges, XVector
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DECIPHER_1.12.0.tar.gz
Windows Binary DECIPHER_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DECIPHER_1.12.0.tgz
Mac OS X 10.9 (Mavericks) DECIPHER_1.12.0.tgz
Browse/checkout source (username/password: readonly)
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