DNAcopy

DNA copy number data analysis

Bioconductor version: Release (2.14)

Segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DNAcopy")

To cite this package in a publication, start R and enter:

    citation("DNAcopy")

Documentation

PDF R Script DNAcopy
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.38.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>= 2)
Depends
Imports
Suggests
System Requirements
URL
Depends On Me CGHcall, cghMCR, Clonality, CNVrd2, CopyNumber450k, CRImage, MEDIPS, snapCGH, SomatiCA
Imports Me ADaCGH2, ArrayTV, ChAMP, Clonality, cn.farms, CNAnorm, GWASTools, MEDIPS, MinimumDistance, QDNAseq, Repitools, snapCGH, SomatiCA
Suggests Me beadarraySNP, Clonality, cn.mops, fastseg, genoset

Package Downloads

Package Source DNAcopy_1.38.0.tar.gz
Windows Binary DNAcopy_1.38.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DNAcopy_1.38.0.tgz
Mac OS X 10.9 (Mavericks)
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