To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

In most cases, you don't need to download the package archive at all.

DNAcopy

DNA copy number data analysis

Bioconductor version: Release (2.14)

Segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

Citation (from within R, enter citation("DNAcopy")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAcopy")

 

PDF R Script DNAcopy
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.38.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>= 2)
Depends
Imports
Suggests
System Requirements
URL
Depends On Me CGHcall, cghMCR, Clonality, CNVrd2, CopyNumber450k, CRImage, MEDIPS, snapCGH, SomatiCA
Imports Me ADaCGH2, ArrayTV, ChAMP, Clonality, cn.farms, CNAnorm, GWASTools, MEDIPS, MinimumDistance, QDNAseq, Repitools, snapCGH, SomatiCA
Suggests Me beadarraySNP, Clonality, cn.mops, fastseg, genoset

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DNAcopy_1.38.1.tar.gz
Windows Binary DNAcopy_1.38.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DNAcopy_1.38.1.tgz
Mac OS X 10.9 (Mavericks) DNAcopy_1.38.1.tgz
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