To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNAshapeR")

In most cases, you don't need to download the package archive at all.

DNAshapeR

DOI: 10.18129/B9.bioc.DNAshapeR    

High-throughput prediction of DNA shape features

Bioconductor version: Release (3.5)

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Author: Tsu-Pei Chiu and Federico Comoglio

Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>

Citation (from within R, enter citation("DNAshapeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNAshapeR")

Documentation

HTML R Script DNAshapeR
PDF   Reference Manual
Text   NEWS

Details

biocViews DNA3DStructure, Software, StructuralPrediction
Version 1.4.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License GPL-2
Depends R (>= 3.3), GenomicRanges
Imports Rcpp (>= 0.12.1), Biostrings, fields
LinkingTo Rcpp
Suggests AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DNAshapeR_1.4.0.tar.gz
Windows Binary DNAshapeR_1.4.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DNAshapeR_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DNAshapeR
Package Short Url http://bioconductor.org/packages/DNAshapeR/
Package Downloads Report Download Stats

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