FlowSOM

DOI: 10.18129/B9.bioc.FlowSOM    

Using self-organizing maps for visualization and interpretation of cytometry data

Bioconductor version: Release (3.8)

FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.

Author: Sofie Van Gassen, Britt Callebaut and Yvan Saeys

Maintainer: Sofie Van Gassen <sofie.vangassen at ugent.be>

Citation (from within R, enter citation("FlowSOM")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("FlowSOM", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FlowSOM")

 

PDF R Script FlowSOM
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, CellBiology, Clustering, FlowCytometry, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License GPL (>= 2)
Depends R (>= 3.2), igraph
Imports flowCore, ConsensusClusterPlus, BiocGenerics, tsne, XML, flowUtils
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL http://www.r-project.org http://dambi.ugent.be
Depends On Me
Imports Me CATALYST, cytofkit, cytofWorkflow, diffcyt, MetaCyto
Suggests Me HDCytoData
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FlowSOM_1.14.0.tar.gz
Windows Binary FlowSOM_1.14.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) FlowSOM_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/FlowSOM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FlowSOM
Package Short Url http://bioconductor.org/packages/FlowSOM/
Package Downloads Report Download Stats

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