To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GRENITS")

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GRENITS

Gene Regulatory Network Inference Using Time Series

Bioconductor version: Release (2.14)

The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.

Author: Edward Morrissey

Maintainer: Edward Morrissey <edward.morrissey at gmail.com>

Citation (from within R, enter citation("GRENITS")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GRENITS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRENITS")

 

PDF R Script GRENITS
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneRegulation, GraphAndNetwork, NetworkInference, Software, TimeCourse
Version 1.16.1
In Bioconductor since BioC 2.9 (R-2.14)
License GPL (>= 2)
Depends R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0)
Imports graphics, grDevices, reshape2, stats, utils
Suggests network
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GRENITS_1.16.1.tar.gz
Windows Binary GRENITS_1.16.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GRENITS_1.16.1.tgz
Mac OS X 10.9 (Mavericks) GRENITS_1.16.1.tgz
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