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GateFinder

This is the released version of GateFinder; for the devel version, see GateFinder.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

DOI: 10.18129/B9.bioc.GateFinder

Bioconductor version: Release (3.23)

Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.

Author: Nima Aghaeepour <naghaeep at gmail.com>, Erin F. Simonds <erin.simonds at gmail.com>

Maintainer: Nima Aghaeepour <naghaeep at gmail.com>

Citation (from within R, enter citation("GateFinder")):

Nima Aghaeepour, Erin F. Simonds. GateFinder: Projection-based Gating Strategy Optimization for Flow and Mass Cytometry. doi:10.18129/B9.bioc.GateFinder, R package version 1.32.0, https://bioconductor.org/packages/GateFinder.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GateFinder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GateFinder")

Details

Package Archives

Follow Installation instructions to use this package in your R session.