GenomicFeatures
Tools for making and manipulating transcript centric annotations
A set of tools and methods for making and manipulating
transcript centric annotations. With these tools the user can
easily download the genomic locations of the transcripts, exons
and cds of a given organism, from either the UCSC Genome
Browser or a BioMart database (more sources will be supported
in the future). This information is then stored in a local
database that keeps track of the relationship between
transcripts, exons, cds and genes. Flexible methods are
provided for extracting the desired features in a convenient
format.
| Author |
M. Carlson, H. Pages, P. Aboyoun, S. Falcon, M. Morgan, D.
Sarkar, M. Lawrence |
| Maintainer |
Biocore Team c/o BioC user list
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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GenomicFeatures")
Documentation
Details
| biocViews |
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| License |
Artistic-2.0 |
| URL |
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Package Downloads