To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

In most cases, you don't need to download the package archive at all.

GenomicFiles

Distributed computing by file or by range

Bioconductor version: Release (3.0)

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Author: Valerie Obenchain, Michael Love, Martin Morgan

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GenomicFiles")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicFiles")

 

PDF R Script Introduction to GenomicFiles
PDF   Reference Manual
Text   NEWS
Video   Reading from a BAM file - Part 2

Details

biocViews DataImport, Infrastructure, Sequencing, Software
Version 1.2.1
In Bioconductor since BioC 2.14 (R-3.1)
License Artistic-2.0
Depends R (>= 3.1.0), methods, BiocGenerics(>= 0.11.2), Rsamtools(>= 1.17.29), GenomicRanges(>= 1.17.16), rtracklayer(>= 1.25.3), BiocParallel(>= 0.7.0)
Imports GenomicAlignments, IRanges
Suggests BiocStyle, RUnit, genefilter, deepSNV, RNAseqData.HNRNPC.bam.chr14
SystemRequirements
URL
Depends On Me
Imports Me derfinder
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GenomicFiles_1.2.1.tar.gz
Windows Binary GenomicFiles_1.2.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GenomicFiles_1.2.1.tgz
Mac OS X 10.9 (Mavericks) GenomicFiles_1.2.1.tgz
Browse/checkout source (username/password: readonly)
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